To cite package ‘transitiontrees’ in publications use:

  Saqr M (2026). _transitiontrees: Pathway Trees and Predictive Pathway
  Discovery in Sequence Data_. R package version 0.1.2,
  <https://github.com/mohsaqr/transitiontrees>.

A BibTeX entry for LaTeX users is

  @Manual{,
    title = {transitiontrees: Pathway Trees and Predictive Pathway Discovery in Sequence Data},
    author = {Mohammed Saqr},
    year = {2026},
    note = {R package version 0.1.2},
    url = {https://github.com/mohsaqr/transitiontrees},
  }