Why cograph | Plotting | Specialized plots | Input formats | Wrangling | Selecting | Weights | Structure and editing | Centrality | Network properties | Community detection | Motifs | Robustness | Disparity filter | Multi-cluster visualization | Multilayer networks | Higher-order networks | TNA integration | Palettes | Further reading
This package is considered a duplicate. The official version of this package is found at:https://sonsoleslp.r-universe.dev/cograph
Package: cograph 2.7.8
Sonsoles López-Pernas
cograph: Analysis and Visualization of Complex Networks
Provides tools for the analysis, visualization, and manipulation of dynamical, social (Saqr et al. (2024) <doi:10.1007/978-3-031-54464-4_10>) and complex networks (Saqr et al. (2025) <doi:10.1145/3706468.3706513>). The package supports multiple network formats and offers flexible tools for heterogeneous, multi-layer, and hierarchical network analysis with simple syntax and extensive toolset.
Authors:
cograph_2.7.8.tar.gz
cograph_2.7.8.zip(r-4.7-any)cograph_2.7.8.zip(r-4.6-any)cograph_2.7.8.zip(r-4.5-any)
cograph_2.7.8.tgz(r-4.6-any)cograph_2.7.8.tgz(r-4.5-any)
cograph_2.7.8.tar.gz(r-4.7-any)cograph_2.7.8.tar.gz(r-4.6-any)
cograph_2.7.8.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
cograph/json (API)
| # Install 'cograph' in R: |
| install.packages('cograph', repos = c('https://mohsaqr.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/sonsoleslp/cograph/issues
Pkgdown/docs site:https://sonsoles.me
Datasets:
- ai_coding - Human-AI Interaction Coding Sequences
- ai_detailed - Human-AI Interaction Coding Sequences
- coding - Human-AI Interaction Coding Sequences
- coding_detailed - Human-AI Interaction Coding Sequences
- human_ai - Human-AI Interaction Coding Sequences
- human_ai_detailed - Human-AI Interaction Coding Sequences
- regulation_net - Learning Regulation Transition Network
- student_interactions - Student Interaction Edge List
Last updated from:83046c84ce. Checks:9 OK. Indexed: no.
| Target | Result | Time | Files | Syslog |
|---|---|---|---|---|
| linux-devel | OK | 259 | ||
| source / vignettes | OK | 359 | ||
| linux-release | OK | 276 | ||
| macos-release | OK | 219 | ||
| macos-oldrel | OK | 236 | ||
| windows-devel | OK | 304 | ||
| windows-release | OK | 274 | ||
| windows-oldrel | OK | 288 | ||
| wasm-release | OK | 120 |
Exports:abbrev_labeladd_edgesadd_nodesaggregate_layersaggregate_weightsas_cographas_mcmlas_tnaassortativityassortativity_attributebinarizebind_networkscentralitycentrality_access_informationcentrality_adaptive_leaderrankcentrality_alphacentrality_authoritycentrality_average_distancecentrality_barycentercentrality_beta_measurecentrality_betweennesscentrality_bottleneckcentrality_bridgingcentrality_bridging_capitalcentrality_bridging_coefficientcentrality_brokerage_coordinatorcentrality_brokerage_gatekeepercentrality_brokerage_itinerantcentrality_brokerage_liaisoncentrality_brokerage_representativecentrality_cdacentrality_centroidcentrality_closenesscentrality_closeness_vitalitycentrality_clusterrankcentrality_coleman_theilcentrality_comm_centralitycentrality_communicabilitycentrality_communicability_betweennesscentrality_community_basedcentrality_community_hub_bridgecentrality_community_mediatorcentrality_constraintcentrality_controlrankcentrality_corenesscentrality_cross_cliquecentrality_current_flow_betweennesscentrality_current_flow_closenesscentrality_dangalchevcentrality_decaycentrality_degreecentrality_degree_discountcentrality_delta_betweennesscentrality_delta_closenesscentrality_diffusioncentrality_diffusion_centralitycentrality_dilcentrality_distance_entropycentrality_diversitycentrality_dkgmcentrality_dmnccentrality_dynamical_importancecentrality_dynamics_sensitivecentrality_eccentricitycentrality_effective_sizecentrality_ego_betweennesscentrality_ehcccentrality_eigenvectorcentrality_enrenewcentrality_entropycentrality_entropy_variationcentrality_epccentrality_exogenouscentrality_expectedcentrality_expected_forcecentrality_expected_influence_1centrality_expected_influence_2centrality_extended_corenesscentrality_extended_gravitycentrality_extended_local_bridgingcentrality_extended_mixed_gravitycentrality_flow_betweennesscentrality_flow_coefficientcentrality_fragmentationcentrality_fuzzy_local_dimensioncentrality_gatewaycentrality_generalized_closenesscentrality_geodesic_kpathcentrality_gilschmidtcentrality_global_structurecentrality_godfathercentrality_graph_regularizationcentrality_gravitycentrality_hararycentrality_harmoniccentrality_hcccentrality_heatmapcentrality_hide_informationcentrality_hubcentrality_hubbellcentrality_hybrid_global_structurecentrality_ieccentrality_iiracentrality_improved_closenesscentrality_improved_global_structurecentrality_inclosenesscentrality_indegreecentrality_ineccentricitycentrality_informationcentrality_inharmoniccentrality_instrengthcentrality_integrationcentrality_iracentrality_katzcentrality_kedcentrality_kpathcentrality_kreachcentrality_laccentrality_laplaciancentrality_leaderrankcentrality_length_scaled_betweennesscentrality_leveragecentrality_lhccentrality_lincentrality_linerankcentrality_lnccentrality_loadcentrality_lobbycentrality_local_bridgingcentrality_local_dimensioncentrality_local_dimension_fixedcentrality_local_efficiencycentrality_local_entropycentrality_local_information_dimensioncentrality_local_volume_dimensioncentrality_localized_bridgingcentrality_malatyacentrality_map_equationcentrality_markovcentrality_mcccentrality_mcgmcentrality_mddcentrality_mixed_gravitycentrality_mnccentrality_modified_expected_forcecentrality_modularity_vitalitycentrality_ncvoterankcentrality_neighbor_distancecentrality_neighborhood_connectivitycentrality_ninlcentrality_node_contractioncentrality_node_contraction_improvedcentrality_outclosenesscentrality_outdegreecentrality_outeccentricitycentrality_outharmoniccentrality_outstrengthcentrality_pagerankcentrality_pairwisediscentrality_participationcentrality_percolationcentrality_powercentrality_prestige_domaincentrality_prestige_domain_proximitycentrality_proximal_betweennesscentrality_radialitycentrality_random_walkcentrality_random_walk_decaycentrality_reaching_localcentrality_redundancycentrality_relative_entropycentrality_renewed_corenesscentrality_residual_closenesscentrality_resistance_curvaturecentrality_rsp_betweennesscentrality_rumorcentrality_s_corecentrality_s_shellcentrality_salsacentrality_semilocalcentrality_shapley_game1centrality_shapley_game2centrality_shapley_game3centrality_single_discountcentrality_spectralrankcentrality_strengthcentrality_stresscentrality_subgraphcentrality_supportcentrality_topological_coefficientcentrality_transitivitycentrality_trusscentrality_trust_pagerankcentrality_two_way_rwcentrality_volumecentrality_voterankcentrality_voterank_pluscentrality_weighted_h_indexcentrality_weighted_kshellcentrality_weighted_leaderrankcentrality_wienercentrality_within_module_zcentrality_wvoterankcentrality_x_degreecentralizationcluster_qualitycluster_significancecnetcographCographLayoutCographNetworkCographThemecolor_communitiescom_consensuscom_ebcom_fgcom_flcom_imcom_ldcom_lecom_lpcom_lvcom_opcom_sgcom_wtcommunitiescommunity_consensuscommunity_edge_betweennesscommunity_fast_greedycommunity_fluidcommunity_infomapcommunity_label_propagationcommunity_leading_eigenvectorcommunity_leidencommunity_louvaincommunity_optimalcommunity_sizescommunity_spinglasscommunity_walktrapcompare_communitiescomplement_networkcontract_nodescore_peripherycqualcsigcsumdegree_distributiondetect_communitiesdisparity_filterdispersiondyad_censusedge_betweennessedge_centralityedge_reciprocityego_networksestrada_indexextract_interlayerextract_layerextract_motifsextract_triadsfilter_edgesfilter_nodesfit_degree_distributionfrom_qgraphfrom_tnaget_dataget_edge_listget_edgesget_groupsget_labelsget_layoutget_metaget_nodesget_shapeget_sourceget_themeggplot_robustnessgroup_centralityhomophilyhtnainvert_weightsis_bipartiteis_directedis_tna_networkk_shortest_pathslabel_abbrevlagglayer_degree_correlationlayer_similaritylayer_similarity_matrixlayout_circlelayout_groupslayout_ovallayout_saqrlayout_springlayout_targetldegcorlist_centralitieslist_layoutslist_paletteslist_shapeslist_svg_shapeslist_themeslsimlsim_matrixmcmlmembershipmlnamotif_censusmotifsmtnamutate_edgesmutate_nodesn_communitiesn_edgesn_nodesneighborhood_overlapnetwork_bridgesnetwork_clique_sizenetwork_cut_verticesnetwork_girthnetwork_global_efficiencynetwork_local_efficiencynetwork_radiusnetwork_rich_clubnetwork_small_worldnetwork_summarynetwork_vertex_connectivitynodesnormalize_weightsoverlay_communitiespalette_bluespalette_colorblindpalette_divergingpalette_pastelpalette_rainbowpalette_redspalette_viridispanel_layoutplot_alluvialplot_bootstrap_forestplot_centralityplot_centrality_compareplot_centrality_distributionplot_centrality_heatmapplot_chordplot_compareplot_comparison_heatmapplot_degree_correlationplot_differenceplot_edge_diff_forestplot_edge_weightsplot_group_permutationplot_heatmapplot_htnaplot_mcmlplot_mixed_networkplot_ml_heatmapplot_mlnaplot_motifsplot_mtnaplot_net_bootstrap_groupplot_net_stabilityplot_netobject_groupplot_netobject_mlplot_network_evolutionplot_permutationplot_robustnessplot_simplicialplot_temporalplot_tnaplot_trajectoriesplot_transitionsproject_bipartitereaching_globalregister_layoutregister_shaperegister_svg_shaperegister_themeremove_edgesremove_isolatesremove_nodesrename_nodesreorder_nodesreverse_edgesrich_clubrich_club_localrobustnessrobustness_aucrobustness_summaryselect_bridgesselect_componentselect_edgesselect_edges_betweenselect_edges_involvingselect_k_coreselect_neighborsselect_nodesselect_topselect_top_edgesset_edgesset_groupsset_layoutset_nodesshortest_pathssimmelian_strengthsimplifysn_edgessn_ggplotsn_layoutsn_nodessn_palettesn_rendersn_savesn_save_ggplotsn_themesoplotspanning_treesplit_componentssplotsplot.boot_glassosplot.cograph_communitiessplot.group_tna_permutationsplot.net_bootstrapsplot.net_mlvarsplot.net_permutationsplot.netobjectsplot.tna_bootstrapsplot.tna_communitiessplot.tna_disparitysplot.tna_permutationsplot.wtna_mixedsubgraphssubset_edgessubset_nodessummarize_clusterssummarize_networksuprasupra_adjacencysupra_interlayersupra_layersymmetrizetheme_cograph_classictheme_cograph_colorblindtheme_cograph_darktheme_cograph_graytheme_cograph_minimaltheme_cograph_naturetheme_cograph_viridisthreshold_edgesto_cographto_data_frameto_dfto_directedto_igraphto_matrixto_networkto_undirectedtplottriad_censustrophic_incoherenceunregister_svg_shapeverify_igraphverify_with_igraphvulnerabilitywagg
Dependencies:clicpp11farverggplot2gluegtableisobandlabelinglifecycleR6RColorBrewerrlangS7scalesvctrsviridisLitewithr
Introduction to cograph
Last update: 2026-09-29
Started: 2026-01-23
Centrality catalogue
How to read this catalogue | Notation | Catalogue index | Argument catalogue
Last update: 2026-09-29
Started: 2026-06-28
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Abbreviate Labels | abbrev_label label_abbrev |
| Add Edges to a Network | add_edges |
| Add Nodes to a Network | add_nodes |
| Aggregate Layers | aggregate_layers lagg |
| Aggregate Edge Weights | aggregate_weights wagg |
| Convert to Cograph Network | as.data.frame.cograph_network as_cograph to_cograph |
| Convert to mcml | as_mcml as_mcml.cluster_summary as_mcml.default as_mcml.group_tna as_mcml.mcml |
| Convert cluster_summary to tna Objects | as_tna as_tna.cluster_summary as_tna.default as_tna.mcml |
| Degree Assortativity Coefficient | assortativity |
| Attribute Assortativity (Homophily) | assortativity_attribute homophily |
| Binarize Edge Weights | binarize |
| Combine Two Networks | bind_networks |
| Calculate Network Centrality Measures | centrality |
| Access and Hide Information | centrality_access_information centrality_hide_information |
| Adaptive LeaderRank | centrality_adaptive_leaderrank |
| Alpha Centrality | centrality_alpha |
| HITS Authority and Hub Scores | centrality_authority centrality_hub |
| Average Distance | centrality_average_distance |
| Barycenter Centrality | centrality_barycenter |
| Beta Measure | centrality_beta_measure |
| Betweenness Centrality | centrality_betweenness |
| Bottleneck Centrality | centrality_bottleneck |
| Bridging Centrality | centrality_bridging |
| Bridging Capital | centrality_bridging_capital |
| Coordinator Brokerage | centrality_brokerage_coordinator |
| Gatekeeper Brokerage | centrality_brokerage_gatekeeper |
| Itinerant Brokerage | centrality_brokerage_itinerant |
| Liaison Brokerage | centrality_brokerage_liaison |
| Representative Brokerage | centrality_brokerage_representative |
| Clustering Degree Algorithm | centrality_cda |
| Centroid Value | centrality_centroid |
| Closeness Centrality | centrality_closeness centrality_incloseness centrality_outcloseness |
| Closeness Vitality | centrality_closeness_vitality |
| ClusterRank | centrality_clusterrank |
| Coleman-Theil Hierarchy Index | centrality_coleman_theil |
| Communicability Centrality | centrality_communicability |
| Communicability Betweenness | centrality_communicability_betweenness |
| Community-Based Centralities | centrality_community_based centrality_community_mediator centrality_comm_centrality |
| Community Hub-Bridge Centrality | centrality_community_hub_bridge |
| Burt's Constraint | centrality_constraint |
| ControlRank Centrality | centrality_controlrank |
| Coreness | centrality_coreness |
| Cross-Clique Connectivity | centrality_cross_clique |
| Current-Flow Betweenness | centrality_current_flow_betweenness |
| Current-Flow Closeness | centrality_current_flow_closeness |
| Dangalchev Closeness | centrality_dangalchev |
| Decay Centrality | centrality_decay |
| Degree Centrality | centrality_degree centrality_indegree centrality_outdegree |
| DegreeDiscountIC and SingleDiscount | centrality_degree_discount centrality_single_discount |
| Diffusion Centrality | centrality_diffusion |
| Diffusion Centrality | centrality_diffusion_centrality |
| Degree and Importance of Lines | centrality_dil |
| Distance Entropy | centrality_distance_entropy |
| Diversity Centrality | centrality_diversity |
| DK-Based Gravity Model | centrality_dkgm |
| Density of Maximum Neighborhood Component | centrality_dmnc |
| Dynamical Importance | centrality_dynamical_importance |
| Dynamics-Sensitive Centrality | centrality_dynamics_sensitive |
| Eccentricity | centrality_eccentricity centrality_ineccentricity centrality_outeccentricity |
| Effective Size | centrality_effective_size |
| Extended Hybrid Characteristic Centrality | centrality_ehcc |
| Eigenvector Centrality | centrality_eigenvector |
| Entropy Centrality | centrality_entropy |
| Entropy Variation | centrality_entropy_variation |
| Exogenous Centrality | centrality_exogenous |
| Expected Centrality | centrality_expected |
| Expected Force Centrality | centrality_expected_force |
| One-Step Expected Influence | centrality_expected_influence_1 |
| Two-Step Expected Influence | centrality_expected_influence_2 |
| Extended Neighborhood Coreness | centrality_extended_coreness |
| Extended Gravity Centrality | centrality_extended_gravity |
| Extended Local Bridging Centrality | centrality_extended_local_bridging |
| Extended Mixed Gravitational Centrality | centrality_extended_mixed_gravity |
| Flow Betweenness | centrality_flow_betweenness |
| Gateway Coefficient | centrality_gateway |
| Generalized Closeness | centrality_generalized_closeness |
| Gil-Schmidt Power Index | centrality_gilschmidt |
| Global Structure Model Centrality | centrality_global_structure |
| Graph Regularization Centrality | centrality_graph_regularization |
| Gravity Centrality | centrality_gravity |
| Harary Centrality | centrality_harary |
| Harmonic Centrality | centrality_harmonic centrality_inharmonic centrality_outharmonic |
| Hybrid Characteristic Centrality | centrality_hcc |
| Heatmap, Flow Coefficient, Local Entropy, Weighted h-index and Redundancy | centrality_flow_coefficient centrality_heatmap centrality_local_entropy centrality_redundancy centrality_weighted_h_index |
| Hubbell Centrality | centrality_hubbell |
| Hybrid Global Structure Model Centrality | centrality_hybrid_global_structure |
| Immediate Effects Centrality | centrality_iec |
| Improved Iterative Resource Allocation | centrality_iira |
| Improved Closeness Centrality | centrality_improved_closeness |
| Improved Global Structure Model Centrality | centrality_improved_global_structure |
| Information Centrality | centrality_information |
| Integration Centrality | centrality_integration |
| Iterative Resource Allocation | centrality_ira |
| Katz Centrality | centrality_katz |
| KED Centrality | centrality_ked |
| Geodesic K-Reach Centrality | centrality_kreach |
| Local Average Connectivity | centrality_lac |
| Laplacian Centrality | centrality_laplacian |
| LeaderRank Centrality | centrality_leaderrank |
| Length-Scaled, Delta and Ego Betweenness, and Delta Closeness | centrality_delta_betweenness centrality_delta_closeness centrality_ego_betweenness centrality_length_scaled_betweenness |
| Leverage Centrality | centrality_leverage |
| Lhc Index | centrality_lhc |
| Lin Centrality | centrality_lin |
| LineRank Centrality | centrality_linerank |
| Local Neighbor Contribution Centrality | centrality_lnc |
| Load Centrality | centrality_load |
| Lobby Index | centrality_lobby |
| Local Bridging Centrality | centrality_local_bridging |
| Local Dimension | centrality_local_dimension |
| Fixed-Radius, Fuzzy and Volume Local Dimensions | centrality_fuzzy_local_dimension centrality_local_dimension_fixed centrality_local_volume_dimension |
| Local Efficiency, s-Core, Fragmentation, k-Path and EPC | centrality_epc centrality_fragmentation centrality_kpath centrality_local_efficiency centrality_s_core |
| Local Information Dimensionality | centrality_local_information_dimension |
| Localized Bridging Centrality | centrality_localized_bridging |
| Malatya Centrality | centrality_malatya |
| Map Equation Centrality | centrality_map_equation |
| Markov Centrality | centrality_markov |
| Maximal Clique Centrality | centrality_mcc |
| Multi-Characteristics Gravity Model Centrality | centrality_mcgm |
| Mixed Gravitational Centrality | centrality_mixed_gravity |
| Maximum Neighborhood Component | centrality_mnc |
| Modified Expected Force Centrality | centrality_modified_expected_force |
| Modularity Vitality | centrality_modularity_vitality |
| NCVoteRank | centrality_ncvoterank |
| Neighborhood Centrality | centrality_neighbor_distance |
| Neighborhood Connectivity | centrality_neighborhood_connectivity |
| Node and Neighbor Layer Information Centrality | centrality_ninl |
| Node Contraction Centrality | centrality_node_contraction centrality_node_contraction_improved |
| PageRank Centrality | centrality_pagerank |
| Pairwise Disconnectivity | centrality_pairwisedis |
| Participation Coefficient | centrality_participation |
| Percolation Centrality | centrality_percolation |
| Bonacich Power Centrality | centrality_power |
| Domain Prestige | centrality_prestige_domain |
| Domain Proximity Prestige | centrality_prestige_domain_proximity |
| Proximal Betweenness Centrality | centrality_proximal_betweenness |
| Radiality Centrality | centrality_radiality |
| Random Walk Centrality | centrality_random_walk |
| Random Walk Decay Centrality | centrality_random_walk_decay |
| Local Reaching Centrality | centrality_reaching_local |
| Relative-Entropy Integrated Evaluation | centrality_relative_entropy |
| Residual Closeness Centrality | centrality_residual_closeness |
| Resistance Curvature | centrality_resistance_curvature |
| Randomized Shortest Paths Betweenness Centrality | centrality_rsp_betweenness |
| Rumor Centrality | centrality_rumor |
| s-shell Index | centrality_s_shell |
| SALSA Authority Centrality | centrality_salsa |
| Semi-Local Centrality | centrality_semilocal |
| Shapley Value Centrality | centrality_shapley_game1 centrality_shapley_game2 centrality_shapley_game3 |
| SpectralRank Centrality | centrality_spectralrank |
| Strength Centrality | centrality_instrength centrality_outstrength centrality_strength |
| Stress Centrality | centrality_stress |
| Subgraph Centrality | centrality_subgraph |
| Topological Coefficient | centrality_topological_coefficient |
| Local Transitivity | centrality_transitivity |
| Truss, Mixed-Degree Decomposition, Bridging Coefficient, Godfather and Support | centrality_bridging_coefficient centrality_godfather centrality_mdd centrality_support centrality_truss |
| Trust-PageRank | centrality_trust_pagerank |
| Two-Way Random Walk Betweenness | centrality_two_way_rw |
| Volume Centrality | centrality_volume |
| VoteRank Centrality | centrality_voterank |
| Weighted k-shell, Renewed Coreness and Geodesic k-path | centrality_geodesic_kpath centrality_renewed_coreness centrality_weighted_kshell |
| Weighted LeaderRank | centrality_weighted_leaderrank |
| Wiener Index Centrality | centrality_wiener |
| Within-Module Degree Z-Score | centrality_within_module_z |
| WVoteRank, EnRenew and VoteRank++ | centrality_enrenew centrality_voterank_plus centrality_wvoterank |
| X-Degree Centrality | centrality_x_degree |
| Centralization index | centralization |
| Cluster Quality Metrics | cluster_quality cqual |
| Test Significance of Community Structure | cluster_significance csig |
| Create a Network Visualization | cograph |
| CographLayout R6 Class | CographLayout |
| CographNetwork R6 Class | CographNetwork |
| CographTheme R6 Class | CographTheme |
| Color Nodes by Community | color_communities |
| Community Detection | communities |
| Consensus Community Detection | community_consensus com_consensus |
| Edge Betweenness Community Detection | community_edge_betweenness com_eb |
| Fast Greedy Community Detection | community_fast_greedy com_fg |
| Fluid Communities Detection | community_fluid com_fl |
| Infomap Community Detection | community_infomap com_im |
| Label Propagation Community Detection | community_label_propagation com_lp |
| Leading Eigenvector Community Detection | community_leading_eigenvector com_le |
| Leiden Community Detection | community_leiden com_ld |
| Louvain Community Detection | community_louvain com_lv |
| Optimal Community Detection | community_optimal com_op |
| Get Community Sizes | community_sizes |
| Spinglass Community Detection | community_spinglass com_sg |
| Walktrap Community Detection | community_walktrap com_wt |
| Compare Community Structures | compare_communities |
| Complement of a Network | complement_network |
| Contract Nodes into Groups | contract_nodes |
| Detect Core-Periphery Structure | core_periphery |
| Cluster Summary Statistics | csum |
| Degree Distribution Visualization | degree_distribution |
| Detect Communities in a Network | detect_communities |
| Disparity Filter | disparity_filter disparity_filter.cograph_network disparity_filter.default disparity_filter.igraph disparity_filter.matrix disparity_filter.tna |
| Dispersion (Backstrom-Kleinberg 2014) | dispersion |
| Dyad Census | dyad_census |
| Calculate Edge Centrality Measures | edge_betweenness edge_centrality |
| Edge Reciprocity | edge_reciprocity |
| Ego-Network Metrics | ego_networks |
| Estrada Index | estrada_index |
| Extract Motifs from Network Data | extract_motifs |
| Extract Triads with Node Labels | extract_triads |
| Filter Edges by Metadata | filter_edges subset_edges |
| Filter Nodes by Metadata or Centrality | filter_nodes subset_nodes |
| Fit Statistical Distributions to Degree Sequence | fit_degree_distribution |
| Convert a qgraph object to cograph parameters | from_qgraph |
| Convert a tna object to cograph parameters | from_tna |
| Extract Raw Edge List from TNA Model | get_edge_list |
| Access and Modify a Cograph Network | get_data get_edges get_groups get_labels get_meta get_nodes get_source is_directed nodes n_edges n_nodes set_edges set_groups set_layout set_nodes |
| Compare Network Robustness (ggplot2) | ggplot_robustness |
| Group Centrality (Everett-Borgatti 1999) | group_centrality |
| Human-AI Interaction Coding Sequences | ai_coding ai_detailed coding coding_detailed hai_datasets human_ai human_ai_detailed |
| Invert Edge Weights (Similarity to Distance and Back) | invert_weights |
| Check if a Matrix Could Be Bipartite | is_bipartite |
| Check if Network is TNA-based | is_tna_network |
| Find K Shortest Loopless Paths (Yen's Algorithm) | k_shortest_paths |
| Degree Correlation Between Layers | layer_degree_correlation ldegcor |
| Layer Similarity | layer_similarity lsim |
| Pairwise Layer Similarities | layer_similarity_matrix lsim_matrix |
| Circular Layout | layout_circle |
| Group-based Layout | layout_groups |
| Oval Layout | layout_oval |
| Layout Registry | get_layout layout_registry list_layouts register_layout |
| Saqr Layout (Start/End transition flow) | layout_saqr |
| Fruchterman-Reingold Spring Layout | layout_spring |
| Target Layout (focal-node, topological) | layout_target |
| Catalogue of the Centrality Measures | list_centralities |
| Get Community Membership | membership |
| Network Motif Analysis | motif_census |
| Network Motif Analysis | as.data.frame.cograph_motif_result motifs |
| Add or Change Edge Attributes | mutate_edges |
| Add or Change Node Attributes | mutate_nodes |
| Get Number of Communities | n_communities |
| Neighborhood Overlap (Jaccard) for Each Edge | neighborhood_overlap |
| Bridge Edges | network_bridges |
| Largest Clique Size | network_clique_size |
| Cut Vertices (Articulation Points) | network_cut_vertices |
| Network Girth (Shortest Cycle Length) | network_girth |
| Global Efficiency | network_global_efficiency |
| Local Efficiency | network_local_efficiency |
| Network Radius | network_radius |
| Rich Club Coefficient | network_rich_club |
| Small-World Coefficient (Sigma) | network_small_world |
| Network-Level Summary Statistics | network_summary |
| Network Vertex Connectivity | network_vertex_connectivity |
| Network Wrangling Verbs | network_wrangling |
| Normalize Edge Weights | normalize_weights |
| Overlay Community Blobs on a Network Plot | overlay_communities |
| Color Palettes | list_palettes palettes palette_blues palette_colorblind palette_diverging palette_pastel palette_rainbow palette_reds palette_viridis |
| Configure a custom multi-panel layout | panel_layout |
| Plot Alluvial Diagram | plot_alluvial |
| Forest Plot for Bootstrap Network Results | plot_bootstrap_forest plot_bootstrap_forest.boot_glasso plot_bootstrap_forest.net_bootstrap plot_bootstrap_forest.net_bootstrap_group plot_bootstrap_forest.tna_bootstrap |
| Plot Centrality | plot_centrality |
| Plot Centrality Comparison | plot_centrality_compare |
| Plot Centrality Distribution | plot_centrality_distribution |
| Plot Centrality Heatmap | plot_centrality_heatmap |
| Chord Diagram | plot_chord |
| Plot Network Difference (alias of plot_difference) | plot_compare |
| Plot Comparison Heatmap | plot_comparison_heatmap |
| Plot Degree-Degree Correlation | plot_degree_correlation |
| Plot Network Difference | plot_difference |
| Forest Plot for Bootstrap Edge Differences | plot_edge_diff_forest plot_edge_diff_forest.boot_glasso |
| Plot Edge Weight Distribution | plot_edge_weights |
| Plot Network as Heatmap | plot_heatmap |
| Plot Heterogeneous TNA Network (Multi-Group Layout) | htna plot_htna |
| Plot Multi-Cluster Multi-Layer Network | plot_mcml |
| Plot Mixed Network | plot_mixed_network |
| Multilayer Network Heatmap | plot_ml_heatmap |
| Multilevel Network Visualization | mlna plot_mlna |
| Multi-Cluster TNA Network Plot | mtna plot_mtna |
| Plot Network Evolution (Small Multiples) | plot_network_evolution |
| Plot Network Robustness | plot_robustness |
| Simplicial Complex Visualization | plot_simplicial |
| Temporal Network Prism (3D Glass Box) | plot_temporal |
| TNA-Style Network Plot (qgraph Compatible) | plot_tna tplot |
| Plot Individual Trajectories | plot_trajectories |
| Plot Transitions Between States | plot_transitions |
| Plot Analysis Results | plot-results plot.cograph_communities plot.cograph_core_periphery plot.cograph_degree_fit plot.cograph_motifs plot.cograph_motif_analysis plot.cograph_motif_result plot.cograph_rich_club plot.cograph_vulnerability plot.tna_disparity plot_group_permutation plot_motifs plot_netobject_group plot_netobject_ml plot_net_bootstrap_group plot_net_stability plot_permutation splot.group_tna_permutation splot.tna_bootstrap splot.tna_disparity splot.tna_permutation |
| Project Bipartite Network to One-Mode | project_bipartite |
| Global Reaching Centrality (Mones, Vicsek & Vicsek 2012) | reaching_global |
| Learning Regulation Transition Network | regulation_net |
| Remove Edges from a Network | remove_edges |
| Remove Isolated Nodes | remove_isolates |
| Remove Nodes from a Network | remove_nodes |
| Rename Nodes | rename_nodes |
| ggplot2 Conversion | render-ggplot |
| Grid Rendering | render-grid |
| Reorder the Nodes of a Network | reorder_nodes |
| Reverse Edge Direction | reverse_edges |
| Rich Club Coefficient | rich_club |
| Local Rich Club Score | rich_club_local |
| Network Robustness Analysis | robustness |
| Calculate Area Under Robustness Curve (AUC) | robustness_auc |
| Summary of Robustness Analysis | robustness_summary |
| Select Bridge Edges | select_bridges |
| Select Connected Component | select_component |
| Select Edges | select_edges |
| Select Edges Between Node Sets | select_edges_between |
| Select Edges Involving Nodes | select_edges_involving |
| Select the k-Core of a Network | select_k_core |
| Select Node Neighbors (Ego Network) | select_neighbors |
| Select Nodes | select_nodes |
| Select Top N Nodes by Centrality | select_top |
| Select Top N Edges | select_top_edges |
| Node Shapes | get_shape list_shapes list_svg_shapes register_shape register_svg_shape shapes unregister_svg_shape |
| Compute Shortest Path Distances | shortest_paths |
| Simmelian Strength (Triangle Count per Edge) | simmelian_strength |
| Simplify a Network | simplify simplify.cograph_network simplify.default simplify.igraph simplify.matrix simplify.tna |
| Set Edge Aesthetics | sn_edges |
| Convert Network to ggplot2 | sn_ggplot |
| Apply Layout to Network | sn_layout |
| Set Node Aesthetics | sn_nodes |
| Apply Color Palette to Network | sn_palette |
| Save Network Visualization | sn_save |
| Save as ggplot2 | sn_save_ggplot |
| Apply Theme to Network | sn_theme |
| Plot Cograph Network | sn_render soplot |
| Minimum or Maximum Spanning Tree | spanning_tree |
| Split a Network into Its Connected Components | split_components |
| Base R Graphics Network Plotting | splot splot.boot_glasso splot.cograph_communities splot.netobject splot.net_bootstrap splot.net_mlvar splot.net_permutation splot.tna_communities splot.wtna_mixed |
| Student Interaction Edge List | student_interactions |
| Extract Specific Motif Instances (Subgraphs) | subgraphs |
| Build MCML from Raw Transition Data | summarize_clusters |
| Summarize Network by Clusters | cnet summarize_network |
| Supra-Adjacency Matrix | supra supra_adjacency |
| Extract Inter-Layer Block | extract_interlayer supra_interlayer |
| Extract Layer from Supra-Adjacency Matrix | extract_layer supra_layer |
| Symmetrize a Directed Network | symmetrize |
| Themes | get_theme list_themes register_theme themes theme_cograph_classic theme_cograph_colorblind theme_cograph_dark theme_cograph_gray theme_cograph_minimal theme_cograph_nature theme_cograph_viridis |
| Threshold Edges by Weight, Count, Proportion or Density | threshold_edges |
| Export Network as Edge List Data Frame | to_data_frame to_df |
| Convert an Undirected Network to Directed | to_directed |
| Convert Network to igraph Object | to_igraph |
| Convert Network to Adjacency Matrix | to_matrix |
| Convert Network to statnet network Object | to_network |
| Convert a Directed Network to Undirected | to_undirected |
| Triad Census | triad_census |
| Trophic Incoherence Parameter | trophic_incoherence |
| Verify Against igraph | verify_igraph verify_with_igraph |
| Node Vulnerability | vulnerability |